Commits

History for

Commits on Aug 2, 2019

Using tool unify to convert Bio/ to use double quotes

unify
authored and
peterjc
committed
b58c4b6

Commits on May 20, 2019

Quote spaces in local NCBI BLAST+ -outfmt argument (#2071)

chris-rands
authored and
peterjc
committed
d463124

Commits on Nov 23, 2018

Update comment for Windows 10
peterjc
authored
cba2771

Commits on Nov 21, 2018

update Bio/Application/__init__.py for windows 10 (#1859)

biojerm
authored and
peterjc
committed
a2e5c52

Commits on May 11, 2018

Replace uses of repr with %r.

bvaisvil
authored and
peterjc
committed
cf26360
Improved exception messaging and code formatting

bvaisvil
authored and
peterjc
committed
0299646
refactor multi-line assert statements into exceptions issue #1515

bvaisvil
authored and
peterjc
committed
0fb37be

Commits on Apr 16, 2018

Dual license Bio.Application [ci skip]
peterjc
committed
c9053cb

Commits on Apr 6, 2018

Added (PRIVATE) to docstrings in Bio.Application

Amrithasuresh
authored and
peterjc
committed
072cea2

Commits on Jun 16, 2017

docstring work for Bio.Application
peterjc
committed
abaf65d

Commits on May 8, 2017

Replace letter-o bullet points with dashes.
peterjc
committed
28d4840

Commits on May 7, 2017

corrections for pydocstyle rule D204

morrme
authored and
peterjc
committed
80988e8

Commits on Apr 25, 2017

pydocstyle D413 blank line after last section
peterjc
committed
30865f6

Commits on Apr 20, 2017

autopep8 --in-place --select E305 Bio/*/*.py
peterjc
committed
7bfb290
fixes for pydocstyle rule D412

morrme
authored and
peterjc
committed
77df7d8

Commits on May 10, 2016

PEP8 E402 module level imports vs __docformat__ placement
peterjc
committed
1119425

Commits on Dec 3, 2015

Use new style Python classes; PEP8 whitespace; Int division
peterjc
committed
3dc0d59

Commits on Aug 31, 2015

Hack for calling subprocess on Windows 8.1
peterjc
committed
780c245

Commits on Jan 7, 2015

Use new-style classes consistently.
peterjc
committed
f24245b

Commits on Jan 5, 2015

Define .parameters explicitly in AbstractCommandline (pylint E1101)
peterjc
committed
9ead5ba

Commits on Nov 11, 2014

Use print function in example.
peterjc
committed
96c938b
explicit docformat definitions

Travis Wrightsman
authored and
peterjc
committed
1e47cee
fixed docstring tests

Travis Wrightsman
authored and
peterjc
committed
61ee9cd
restructured text progress

Travis Wrightsman
authored and
peterjc
committed
60c41f2

Commits on Oct 29, 2014

PEP8 fixes Alphabet, Application, Blast
carlosp420
committed
e43c200

Commits on Oct 27, 2014

autopep8 E261 - Fix spacing after comment hash
peterjc
committed
d18aab8

Commits on Oct 20, 2014

Fix PEP8 W191 (indentation contains tabs).
cbrueffer
committed
41687c9

Commits on Oct 17, 2014

Remove EOF whitespace (PEP8 W391).
cbrueffer
committed
27826ab

Commits on May 17, 2014

Fix typo spotted by Vincent Davis
peterjc
committed
b3a4e43

Commits on Apr 30, 2014

Bio.Application should close /dev/null handles
peterjc
committed
ad1745a

Commits on Apr 27, 2014

Put return code at start of Bio.Application error message.
peterjc
committed
9860973

Commits on Feb 5, 2014

Formatting changes

saketkc
authored and
peterjc
committed
82f03af
Class docstring; fix typo; use comment not multiline string
peterjc
committed
d6156fc
Adding _AurgumentList for passing in multiple filenames for the samtools wrapper

saketkc
authored and
peterjc
committed
019796c

Commits on Nov 3, 2013

Use basestring from Bio._py3k
peterjc
committed
57bb2c0