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ExplodingCabbage
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biopython
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biopython
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Commits on Sep 27, 2019
Address future D412 cases. (#2286)
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MarkusPiotrowski
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Added support for check_same_thread (#2233)
pkerpedjiev
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peterjc
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6d09244
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Commits on Sep 26, 2019
Fix keys in DNA_TMM1 (#2283)
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jjti
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MarkusPiotrowski
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9626d6f
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Commits on Sep 25, 2019
Make Entrez retry logic treat 429s as retryable errors; also fix it crashing in Python 2 (#2278)
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ExplodingCabbage
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peterjc
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Fix broken RST formatting
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ExplodingCabbage
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peterjc
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Document undocumented Entrez variables
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Fix a minor docstring typo
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Commits on Sep 20, 2019
Declare Bio.Crystal obsolete (#2272)
svalqui
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peterjc
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ffcba6e
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Commits on Sep 18, 2019
raise error for empty files in PdbSeqres, CifSeqres, Abi, AbiTrim
DevangThakkar
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bda4ea2
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Incorporate suggestions from @peterjc
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sbliven
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Ran black version 19.3b0 on Bio.PDB
sbliven
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69c249d
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Black preparation
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Commits on Sep 17, 2019
Minimal support for GenBank TSA files (#2269)
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Commits on Sep 16, 2019
Rework loop which did not look nice after black formatting.
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Fix string literals (which black does not handle yet)
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082b4d7
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Fix comment placement (thanks Spencer)
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39268ea
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Ran black version 19.3b0 on Bio.SeqIO
black
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peterjc
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c3a25ef
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Tweak to avoid black vs flake8 D202 conflict
peterjc
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Avoid slash continuation (looked bad after black)
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Tweak comment placement for black
peterjc
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158ddf7
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Tell black not to touch this dictionary indentation
peterjc
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Commits on Sep 13, 2019
Applied black style to Bio.Wise.
svalqui
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peterjc
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173144b
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Applied black style to Bio.UniProt.
svalqui
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peterjc
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Commits on Sep 12, 2019
Automatically fix double quotes in misc files
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unify
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peterjc
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Commits on Sep 11, 2019
Apply black to GenomeDiagram; update .flake8 &NEWS (#2251)
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peterjc
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MarkusPiotrowski
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d4b782c
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Commits on Sep 5, 2019
Pairwise2: Add keyword argument "show_full_sequences" to "format_alignment" (#2143)
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MarkusPiotrowski
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959d052
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Added code comments for clarity.
Nick Negretti
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peterjc
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608ebab
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Fix origin wrapping inside join()
nimne
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85b934c
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Commits on Sep 3, 2019
use raise_from to prevent exception chaining in Python3
mdehoon
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peterjc
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5e1d618
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Commits on Aug 30, 2019
Cluster pep7 (#2239)
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mdehoon
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Dual license Bio/Compass/__init__.py
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Commits on Aug 29, 2019
Raise NotImplementedError when opening bgzf files for append
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af320dc
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Dual license Bio/PDB/parse_pdb_header.py
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Dual license Bio/PDB/QCPSuperimposer/__init__.py
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Dual license Bio/PDB/AbstractPropertyMap.py
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853c147
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