The ColabFit Exchange: An online repository to store and access data for machine learning interatomic potentials (MLIPs)
ColabFit on GitHub: Tools to access data from / submit data to the ColabFit Exchange
KIM REVIEW: Commentaries and discussion on seminal papers in molecular simulation.
I write scripts to parse output from scientific instruments and software;
generate, evaluate and visualize datasets;
and ingest data to databases.
Work in publications:
Characterization of RBM15 protein binding with long noncoding RNAs, JSB (2025)
Investigating the interplay between RNA structural dynamics and RNA chemical probing experiments, NAR (2025)
Advancing the ColabFit Exchange towards a Web-scale Data Source for Machine Learning Interatomic Potentials, NeurIPS (2024)
ColabFit exchange: Open-access datasets for data-driven interatomic potentials, JCP (2023)
Conformation and structural dynamics of the Xist lncRNA A-repeats, bioRxiv (preprint)
Cooperativity in RNA chemical probing experiments modulates RNA 2D structure, bioRxiv (preprint)



