Developing Benchmarks

An ePIC tutorial that shows analyzers how to turn an analysis script into a benchmark: defining Snakemake workflows, running on eicweb GitLab continuous integration, adding status flags, and producing useful benchmark figures.

This lesson is built with The Carpentries Workbench.

The lesson is rendered with the Workbench Docker image (no local R installation needed). A Makefile wraps the commands:

make preview   # build the site into site/docs/
make serve     # serve site/docs/ at http://localhost:4321
make clean     # drop the build cache

We welcome all contributions to improve the lesson! Please familiarize yourself with our Contribution Guide. For the Workbench Markdown syntax (callouts, challenges, etc.) see the sandpaper documentation.

Current maintainers of this lesson are

• Torri Jeske, @torrijeske
• Dmitry Kalinkin, @veprbl

To cite this lesson, please consult the CITATION.cff file.