List data folders under setup.py's packages list

peterjc · peterjc · commit 41982cd9f70c · 2025-01-21T13:30:00.000Z
Should silence some new setuptools deprecation warnings like: SetuptoolsDeprecationWarning: Installing 'Bio.Align.substitution_matrices.data' as data is deprecated, please list it in `packages`. See issue #4050
diff --git a/setup.py b/setup.py
@@ -127,6 +127,7 @@ def can_import(module_name):
     "Bio.Affy",
     "Bio.Align",
     "Bio.Align.substitution_matrices",
+    "Bio.Align.substitution_matrices.data",
     "Bio.AlignIO",
     "Bio.Alphabet",
     "Bio.Blast",
@@ -137,6 +138,8 @@ def can_import(module_name):
     "Bio.Data",
     "Bio.Emboss",
     "Bio.Entrez",
+    "Bio.Entrez.DTDs",
+    "Bio.Entrez.XSDs",
     "Bio.ExPASy",
     "Bio.GenBank",
     "Bio.Geo",
