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Commits on Jun 24, 2016
Implement tests for new utility methods in sequence objects #491
lafita
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Method for total gapped positions and coverage in aligned sequences
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Method for percentage of identity of a sequence pair #491
lafita
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Commits on Jun 16, 2016
squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"
Mohamed Ezzat
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f3f7395
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Commits on Jun 15, 2016
squid:S2063 - Comparators should be Serializable
Mohamed Ezzat
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23136cb
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Commits on Jun 10, 2016
squid:S2130 - Parsing should be used to convert Strings to primitives
Mohamed Ezzat
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Commits on Jun 9, 2016
Merge pull request #499 from DevFactory/release--primitives-should-not-be-boxed-just-for-String-conversion-fix-1
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Commits on Jun 5, 2016
squid:S2131 - Primitives should not be boxed just for String conversion
Mohamed Ezzat
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Commits on Jun 4, 2016
squid:S1197 - Array designators should be on the type, not the variable
Mohamed Ezzat
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713171b
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Commits on Jun 3, 2016
squid:S1125 - Literal boolean values should not be used in condition expressions
Mohamed Ezzat
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Commits on Mar 10, 2016
Running spacestotabs on recent changes
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Commits on Mar 9, 2016
Removing unnecessary casts
sbliven
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38934ac
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More whitespace fixes
sbliven
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af59f90
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Removing unused imports
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Automatically adding missing @Override
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Converting initial spaces to tabs.
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Removing template messages
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Remove trailing whitespace globally from .java files
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Running addlicense.sh
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Commits on Mar 7, 2016
Make classes serializable for Spark
abradle
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56b1fec
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Make classes serializable for Spark
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Make classes serializable for Spark
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Make classes serializable for Spark
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Make classes serializable for Spark
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Updates to make serializable for Spark
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Commits on Mar 4, 2016
Minor doc addition
sbliven
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e4ac678
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Commits on Feb 24, 2016
Merge remote-tracking branch 'upstream/master'
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3f1f498
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Fixing issues arising after making DownloadChemCompProvider the default
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Commits on Feb 19, 2016
Add method to allow pulling protein aliases from UniProt records
emckee2006
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e68da52
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Commits on Feb 3, 2016
FastaWriter was throwing Exception instead of IOException
lafita
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b756496
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Commits on Jan 29, 2016
Adding serializable interface to a few classes
josemduarte
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e06a702
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Commits on Jan 28, 2016
A bunch of small fixes, mostly docs and logs
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6e6ba98
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Commits on Jan 26, 2016
Merge branch 'master' of github.com:biojava/biojava
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Commits on Jan 25, 2016
Merge pull request #363 from emckee2006/master
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getting Junit test to work on installations that have empty spaces in directory names
andreasprlic
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dc5fa43
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