Commits

History for

Commits on Apr 13, 2026

Remove Jython specific code in BioSQL
peterjc
committed
ef35322

Commits on Jan 17, 2026

Replace Union and Optional with Python 3.10+ typing
peterjc
committed
d952922

Commits on Oct 15, 2025

Remove unused or read only globals (flake8 F824)
peterjc
committed
4c8696a

Commits on Sep 23, 2024

- Implemented lazy _per_letter_annotation construction to speed up SeqRecord initialization (if you directly access the protected _per_letter_annotation, be aware that it can now be None. This corr…

flaar94
authored and
peterjc
committed
e6d24c5

Commits on Jun 27, 2024

pep 585 typing rewrites etc using pyupgrade 3.16.0

pyupgrade
authored and
peterjc
committed
519066c

Commits on Jun 26, 2024

Apply isort (forcing single lines, not sorting by type) via ruff

ruff-isort
authored and
peterjc
committed
de0bb21

Commits on May 1, 2024

Misc spellings flagged by codespell (#4716)
peterjc
authored
a47460e

Commits on Mar 14, 2024

ruff format v0.3.1, black v24.2.0
peterjc
committed
57056bb

Commits on Nov 21, 2023

Remove deprecated code from Bio.SeqFeature (#4503)
mdehoon
authored
0319787

Commits on Nov 2, 2023

ruff fix PIE790 Unnecessary pass statement
peterjc
committed
68e3c98

Commits on Nov 1, 2023

Fix E721 spotted with latest flake8/ruff
peterjc
committed
e4903bb

Commits on Aug 11, 2023

Include py.typed declaration files for type annotation
peterjc
committed
04bcb5b

Commits on Aug 8, 2023

Basic type hints: QualityIO, SeqRecords, ...

authored and
peterjc
committed
42ca9f2

Commits on Nov 20, 2022

remove deprecated code from Bio.Seq (#4173)
mdehoon
authored
dcf52bd

Commits on Nov 15, 2022

Fixes for flake8 E741 ambiguous variable name 'l'
peterjc
committed
d0e5efe

Commits on Oct 8, 2022

simple SimpleLocation (#4124)
mdehoon
authored
4b6b105

Commits on Oct 7, 2022

Rename Bio.SeqFeature.FeatureLocation to SimpleLocation (#4076)

peterjc
and
mdehoon
authored
dd8d5b7

Commits on May 10, 2022

Do not use assert outside of testing code

whosayn
authored and
peterjc
committed
a24bec9

Commits on Sep 13, 2021

f-strings on BioSQL using flynt 0.69
peterjc
committed
509b78e

Commits on Sep 11, 2021

pyupgrade: f-strings (easy cases)
peterjc
committed
e5c9cab

Commits on Aug 28, 2021

Assorted spelling corrections from codespell
peterjc
committed
51fb8f9

Commits on Aug 27, 2021

Automatically remove redundant commas
peterjc
committed
e9496f5

Commits on Apr 20, 2021

Replace remaining python2-style print commands by python3-style print function (#3533)
mdehoon
authored
1716978

Commits on Feb 16, 2021

Add __slots__ to sequence objects (#3482)
mdehoon
authored
2865e97

Commits on Dec 24, 2020

Seq bytes (#3451)
mdehoon
authored
7b09da6

Commits on Dec 17, 2020

use an abstract base class (#3445)
mdehoon
authored
14a77f2

Commits on Dec 15, 2020

use UndefinedSequenceData for undefined sequences (#3440)
mdehoon
authored
2c889ff

Commits on Dec 13, 2020

remove deprecated code (#3429)
mdehoon
authored
8d63ac4

Commits on Dec 6, 2020

BioSQL doesn't need to subclass Seq (#3428)
mdehoon
authored
5d838b9

Commits on Nov 21, 2020

Seq bytes (#3333)
mdehoon
authored
450e5f7

Commits on Oct 24, 2020

Accept Seq, MutableSeq objects in Seq, MutableSeq initializers ... (#3323)
mdehoon
authored
5c5f520

Commits on Sep 2, 2020

remove remaining unicode stuff (#3248)
mdehoon
authored
7990b59

Commits on Jul 28, 2020

removed alphabets from BioSQL (#3151)
mdehoon
authored
8ee89a4

Commits on Jun 23, 2020

Drop alphabet on Seq multiplication and conversion.
peterjc
committed
cc589fe

Commits on Feb 9, 2020

BioSQL updates for python3 (#2654)
mdehoon
authored
85e8956