Commits

History for

Commits on Dec 16, 2015

Add docformat statements to *py files in BioSql and Scripts/

bosborne
authored and
peterjc
committed
a4e3082

Commits on Dec 3, 2015

Make single calls to isinstance using a tuple of classes
peterjc
committed
b23936d

Commits on Jun 25, 2015

Remove trailing whitespace
peterjc
committed
24643a4
Don't alter the SeqRecord

ctSkennerton
authored and
peterjc
committed
b709f7e
Added ability to change the seqfeature source

ctSkennerton
authored and
peterjc
committed
46b101a

Commits on Jan 7, 2015

Use new-style classes consistently.
peterjc
committed
f24245b
Selective use of autopep8 to remove whitespace after commas
peterjc
committed
838a8e1
PEP8 blank lines (autopep8 E302)
peterjc
committed
45f5b1f

Commits on Nov 11, 2014

explicit docformat definitions

Travis Wrightsman
authored and
peterjc
committed
1e47cee
fixed more doctest problems

Travis Wrightsman
authored and
peterjc
committed
ae21956
finished solving reST warnings in docstrings

Travis Wrightsman
authored and
peterjc
committed
feb5ed5
Interface specific adapter class for mysql.connector in BioSQL

eap
authored and
peterjc
committed
3c84345

Commits on Oct 27, 2014

PEP8 tweaks to BioSQL, mostly using autopep8
peterjc
committed
47c1005
autopep8 E265 - Format block comments.
peterjc
committed
82272b1

Commits on May 25, 2014

Remove hack for old psycopg
peterjc
committed
3be98b9
Revert tweak written for psycopg
peterjc
committed
3912288
pure python mysql driver for BioSQL using Oracle's mysql-connector

tiagoantao
authored and
peterjc
committed
471d69c

Commits on May 8, 2014

Move code from deprecated method into replacement.
peterjc
committed
e9fab64

Commits on Apr 30, 2014

Avoid deprecated universal read lines mode under Python 3
peterjc
committed
e998c62
Close handle in BioSQL load_database_sql
peterjc
committed
b498d6d

Commits on Mar 27, 2014

Remove last remnants of Seq.tostring and deprecate it

bow
authored and
peterjc
committed
cab9b20

Commits on Nov 3, 2013

Use unicode from Bio._py3k
peterjc
committed
dc80798
Use basestring from Bio._py3k
peterjc
committed
57bb2c0
Tweaks so we can drop the 2to3 xrange fixer
peterjc
committed
5be07dd

Commits on Oct 24, 2013

Commits on Sep 29, 2013

Remove unnecessary some_dict.keys() calls.
peterjc
committed
3e287df

Commits on Sep 28, 2013

Tweak this instance check for nicer post-2to3 result
peterjc
committed
b1c9b86
Turn sibling imports into relative imports (via 2to3)
peterjc
committed
eddb1a9
Remove redundant list comprehensions
peterjc
committed
a43e777

Commits on Sep 9, 2013

Add: from __future__ import print_statement
peterjc
committed
de12c5e

Commits on Feb 19, 2013

BioSQL support in Jython
tiagoantao
committed
d9994a4

Commits on Feb 7, 2013

Add a parts property to FeatureLocation for ease of use
peterjc
committed
ff6c999
Tweaks to avoid sub_feature deprecation warnings in BioSQL
peterjc
committed
d76941b
Use compound locations not sub_features in BioSQL loader
peterjc
committed
5ad48d8