Commits

History for

Commits on Dec 30, 2013

Wrote a method IOUtils.print(String, File).
dmyersturnbull
committed
cdaefc4

Commits on Oct 23, 2013

Convert %i (which formatter doesn't like) to %d for integers
emckee2006
committed
2d9cbf2

Commits on Oct 16, 2013

Clean up the majority of compile warnings
emckee2006
committed
8faddba

Commits on Oct 13, 2013

Commits on Oct 12, 2013

Update test to use proper assert for tests
emckee2006
committed
efa10f8

Commits on Oct 11, 2013

Add a test of the Genbank Functionality
emckee2006
committed
cf4efc8
Remove external dependancy on commons-lang3
emckee2006
committed
d8bf8e1
Add a fairly basic genbank writer (mostly ported from BioPython), expose
emckee2006
committed
160d231

Commits on Sep 24, 2013

[maven-release-plugin] prepare for next development iteration
andreasprlic
committed
e3b1242
[maven-release-plugin] prepare release biojava-3.0.7
andreasprlic
committed
036e491
[maven-release-plugin] rollback the release of biojava-3.0.7
andreasprlic
committed
cc8a9eb
[maven-release-plugin] prepare release biojava-3.0.7
andreasprlic
committed
c474e39
[maven-release-plugin] rollback the release of biojava-3.0.7
andreasprlic
committed
eb10991
[maven-release-plugin] prepare release biojava-3.0.7
andreasprlic
committed
08a1976
[maven-release-plugin] rollback the release of biojava-3.0.7
andreasprlic
committed
9409957
[maven-release-plugin] prepare for next development iteration
andreasprlic
committed
7637561
[maven-release-plugin] prepare release biojava-3.0.7
andreasprlic
committed
1762f68
[maven-release-plugin] rollback the release of biojava-3.0.7

tomcat
authored and
tomcat
committed
0d9bce3
[maven-release-plugin] prepare release biojava-3.0.7

tomcat
authored and
tomcat
committed
ecdf63e

Commits on Sep 23, 2013

some minor cleanup
andreasprlic
committed
46ecca7
#53 adding junit test to reproduce error and adding patch as proposed by
andreasprlic
committed
a2cd3a8

Commits on Aug 13, 2013

Added GenbankCookbookTest test case.

Karl Nicholas
authored and
Karl Nicholas
committed
dcbfd54

Commits on Aug 12, 2013

Fixed bug created in SequenceFile when converted to BufferedReader from

Karl Nicholas
authored and
Karl Nicholas
committed
6786244

Commits on Aug 11, 2013

More work on Genbank files, bringing them inline with interfaces.

Karl Nicholas
authored and
Karl Nicholas
committed
40ff96b
Added GenbankParser and changed other Genbank code to use it.

Karl Nicholas
authored and
Karl Nicholas
committed
4949980

Commits on Aug 8, 2013

Added a GenbankProxySequenceReader class that takes an accessionid and

Karl Nicholas
authored and
Karl Nicholas
committed
e3d4da3

Commits on Aug 4, 2013

Updated GenbankReader and files to properly handle AbstractSequence and

Karl Nicholas
authored and
Karl Nicholas
committed
0bed2ad

Commits on Jul 31, 2013

Added simple Genbank reader. Update CommandPrompt to use the Genbank

Karl Nicholas
authored and
Karl Nicholas
committed
f3c2081

Commits on Jul 15, 2013

[maven-release-plugin] prepare for next development iteration
Andreas Prlic
committed
023c8d5
[maven-release-plugin] prepare release biojava-3.0.6
Andreas Prlic
committed
426d148

Commits on Jun 18, 2013

Fixed negative permutations.
dmyersturnbull
committed
d142193

Commits on Jun 17, 2013

Added methods for cyclic permutations.
dmyersturnbull
committed
3dfebae