diff --git a/src/usethis/_core/tool.py b/src/usethis/_core/tool.py
index 62ac3846..b3bce896 100644
--- a/src/usethis/_core/tool.py
+++ b/src/usethis/_core/tool.py
@@ -449,8 +449,7 @@ def use_ruff(
         tool.add_configs()
 
         if linter:
-            tool.select_rules(rule_config.get_all_selected())
-            tool.ignore_rules(rule_config.get_all_ignored())
+            tool.apply_rule_config(rule_config)
         if PreCommitTool().is_used():
             tool.add_pre_commit_config()
         else:
diff --git a/src/usethis/_tool/impl/ruff.py b/src/usethis/_tool/impl/ruff.py
index f4d6efd0..f69b07b3 100644
--- a/src/usethis/_tool/impl/ruff.py
+++ b/src/usethis/_tool/impl/ruff.py
@@ -409,9 +409,7 @@ def apply_rule_config(self, rule_config: RuleConfig) -> None:
         """
         self.select_rules(rule_config.get_all_selected())
         self.ignore_rules(rule_config.get_all_ignored())
-        self.ignore_rules_in_glob(
-            rule_config.tests_unmanaged_ignored, glob="*/tests/**"
-        )
+        self.ignore_rules_in_glob(rule_config.tests_unmanaged_ignored, glob="tests/**")
 
     def remove_rule_config(self, rule_config: RuleConfig) -> None:
         """Remove the Ruff rules associated with a rule config from the project.
diff --git a/tests/usethis/_core/test_core_tool.py b/tests/usethis/_core/test_core_tool.py
index a354f910..97af2ae6 100644
--- a/tests/usethis/_core/test_core_tool.py
+++ b/tests/usethis/_core/test_core_tool.py
@@ -1369,10 +1369,24 @@ def test_inp_rules_not_selected_for_tests_dir(self, tmp_path: Path):
 select = ["INP"]
 
 [lint.per-file-ignores]
-"*/tests/**" = ["INP"]
+"tests/**" = ["INP"]
 """
             )
 
+        @pytest.mark.usefixtures("_vary_network_conn")
+        def test_ruff_passes(self, tmp_path: Path):
+            with change_cwd(tmp_path), files_manager():
+                # Arrange
+                use_ruff()
+                use_pytest()
+
+                # Act
+                use_import_linter()
+
+            # Assert
+            with change_cwd(tmp_path), files_manager():
+                call_uv_subprocess(["run", "ruff", "check", "."], change_toml=False)
+
     class TestRemove:
         def test_config_file(self, uv_init_repo_dir: Path):
             # Arrange
@@ -2419,6 +2433,21 @@ def test_foo():
                 # Assert (that this doesn't raise an error)
                 call_uv_subprocess(["run", "pytest"], change_toml=False)
 
+        @pytest.mark.usefixtures("_vary_network_conn")
+        def test_import_linter_inp_rules(self, tmp_path: Path):
+            with change_cwd(tmp_path), files_manager():
+                # Arrange
+                use_import_linter()
+
+                # Act
+                (tmp_path / "ruff.toml").touch()
+                use_ruff()
+
+            # Assert
+            with change_cwd(tmp_path), files_manager():
+                contents = (tmp_path / "ruff.toml").read_text()
+                assert """"tests/**" = ["INP"]""" in contents
+
     class TestRemove:
         class TestRuffIntegration:
             def test_deselected(self, uv_init_dir: Path):
diff --git a/tests/usethis/_interface/test_tool.py b/tests/usethis/_interface/test_tool.py
index 9e22fcce..6f547976 100644
--- a/tests/usethis/_interface/test_tool.py
+++ b/tests/usethis/_interface/test_tool.py
@@ -404,6 +404,20 @@ def test_how(self, tmp_path: Path):
 """
         )
 
+    @pytest.mark.usefixtures("_vary_network_conn")
+    def test_passes_using_all_tools(self, uv_init_dir: Path):
+        """Test that pytest runs with all tools installed."""
+        with change_cwd(uv_init_dir):
+            # Arrange, Act
+            for cmd in ALL_TOOL_COMMANDS:
+                if not usethis_config.offline:
+                    call_subprocess(["usethis", "tool", cmd])
+                else:
+                    call_subprocess(["usethis", "tool", cmd, "--offline"])
+
+            # Act, Assert
+            call_uv_subprocess(["run", "ruff", "check", "."], change_toml=False)
+
 
 class TestPytest:
     @pytest.mark.usefixtures("_vary_network_conn")