Skip to content

Commit 6e1452a

Browse files
pajannepajanne
committed
upgrade notebooks to jupyter; update some solutions; change session 4: put back csv section with delimited file and add more examples on biopython
1 parent bacee81 commit 6e1452a

29 files changed

Lines changed: 7067 additions & 6779 deletions

‎Introduction_to_python_session_1.ipynb‎

Lines changed: 1954 additions & 1830 deletions
Large diffs are not rendered by default.

‎Introduction_to_python_session_2.ipynb‎

Lines changed: 1368 additions & 1320 deletions
Large diffs are not rendered by default.

‎Introduction_to_python_session_3.ipynb‎

Lines changed: 1142 additions & 1106 deletions
Large diffs are not rendered by default.

‎Introduction_to_python_session_4.ipynb‎

Lines changed: 1393 additions & 1431 deletions
Large diffs are not rendered by default.

‎biopython.ipynb‎

Lines changed: 295 additions & 264 deletions
Large diffs are not rendered by default.

‎data/searchSRS.txt‎

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,3 @@
1+
SRS006837
2+
SRS003875
3+
SRS009999

‎install/Dockerfile‎

Lines changed: 12 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,12 @@
1+
FROM ubuntu
2+
MAINTAINER Mark Dunning<mark.dunning@cruk.cam.ac.uk>
3+
4+
RUN sudo apt-get update
5+
RUN apt-get install -y ipython ipython-notebook git
6+
RUN git clone https://github.com/pycam/python-intro.git
7+
8+
EXPOSE 8888
9+
ENV USE_HTTP 0
10+
11+
WORKDIR python-intro/
12+
RUN ipython notebook --no-browser --port 8888 --ip=* Introduction_to_python_session_1.ipynb

‎install/vbox_installer.sh‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
#!/usr/bin/env bash
2+
# PyCam ubuntu installer
3+
4+
sudo su -
5+
apt-get install gedit
6+
apt-get install git
7+
apt-get install python-pip
8+
apt-get install python-zmq
9+
apt-get install python-matplotlib
10+
apt-get install python-biopython
11+
12+
apt-get install virtualbox-guest-utils
13+
apt-get install dkms
14+
15+
pip install ipython[notebook]
16+
17+
apt-get autoremove
18+
apt-get clean
19+
exit
20+
21+
git clone https://github.com/pycam/python-intro.git course

0 commit comments

Comments
 (0)