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# SPDX-License-Identifier: Apache-2.0
# SPDX-FileCopyrightText: Copyright The Lance Authors
import os
import pickle
import re
from pathlib import Path
import lance
import numpy as np
import pandas as pd
import pyarrow as pa
import pytest
from lance.arrow import (
BFloat16,
BFloat16Array,
FixedShapeImageTensorType,
ImageArray,
ImageURIArray,
PandasBFloat16Array,
bfloat16_array,
)
from lance.file import LanceFileReader
from ml_dtypes import bfloat16
def test_bf16_value():
val = BFloat16(1.124565)
assert val == BFloat16(1.124565)
assert str(val) == "1.125"
should_be_true = [
BFloat16(1.1) > BFloat16(1.0),
BFloat16(1.1) >= BFloat16(1.0),
BFloat16(1.1) != BFloat16(1.0),
BFloat16(1.0) < BFloat16(1.1),
BFloat16(1.0) <= BFloat16(1.1),
]
assert all(comparison for comparison in should_be_true)
should_be_false = [
BFloat16(1.1) < BFloat16(1.0),
BFloat16(1.1) <= BFloat16(1.0),
BFloat16(1.1) == BFloat16(1.0),
BFloat16(1.0) >= BFloat16(1.1),
BFloat16(1.0) >= BFloat16(1.1),
]
assert not any(comparison for comparison in should_be_false)
def test_bf16_repr():
data = [1.1, None, 3.4]
arr = bfloat16_array(data)
assert isinstance(arr, BFloat16Array)
expected = [BFloat16(1.1), None, BFloat16(3.4)]
assert arr[0].as_py() == expected[0]
assert arr[1].as_py() == expected[1]
assert arr[2].as_py() == expected[2]
assert arr.to_pylist() == expected
expected_re = r"""<lance.arrow.BFloat16Array object at 0x[\w\d]+>
\[
1.1015625,
None,
3.40625
\]"""
assert re.match(expected_re, repr(arr))
# TODO: uncomment tests once fixed upstream.
# https://github.com/apache/arrow/issues/36648
# tab = pa.table({"x": arr})
# expected_re = r"""pyarrow.Table
# x: extension<lance.bfloat16<BFloat16Type>>
# ---
# x: \[\[1.1015625, None, 3.40625\]\]"""
# assert re.match(expected_re, repr(tab))
def test_bf16_array_str():
from ml_dtypes import bfloat16
np_arr = np.array([1.0, 2.0, 3.0], dtype=bfloat16)
arr = BFloat16Array.from_numpy(np_arr)
assert str(arr) == "[\n 1,\n 2,\n 3\n]"
def test_bf16_pandas(provide_pandas):
data = [1.1, None, 3.4]
arr = bfloat16_array(data)
arr_pandas = arr.to_pandas()
assert arr_pandas[0] == BFloat16(1.1)
assert arr_pandas[1] is None
assert arr_pandas[2] == BFloat16(3.4)
# Can instantiate with dtype string
series = pd.Series(arr_pandas, dtype="lance.bfloat16")
pd.testing.assert_series_equal(arr_pandas, series)
# Can roundtrip to Arrow
arr_arrow = pa.array(arr_pandas)
assert isinstance(arr_arrow, BFloat16Array)
assert arr == arr_arrow
pd.testing.assert_series_equal(arr_arrow.to_pandas(), arr_pandas)
def test_bf16_numpy():
import numpy as np
from ml_dtypes import bfloat16
data = [1.1, 2.1, 3.4]
arr = bfloat16_array(data)
arr_numpy = arr.to_numpy()
expected = np.array(data, dtype=bfloat16)
np.testing.assert_array_equal(arr_numpy, expected)
# Can roundtrip to Pandas
arr_pandas = PandasBFloat16Array.from_numpy(arr_numpy)
np.testing.assert_array_equal(arr_pandas.to_numpy(), expected)
# Can roundtrip to Arrow
arr_arrow = BFloat16Array.from_numpy(arr_numpy)
assert arr == arr_arrow
np.testing.assert_array_equal(arr_arrow.to_numpy(), expected)
def test_bf16_array_cast():
for dt in [np.float16, np.float32, np.float64]:
floats = pa.array(np.array([1.0, 2.0, 3.0, 4.0], dtype=dt))
bf16_arr = lance.arrow.cast(floats, "bfloat16")
assert isinstance(bf16_arr, BFloat16Array)
assert bf16_arr[0] == BFloat16(1.0)
assert bf16_arr[0] == bfloat16(1.0)
casted = lance.arrow.cast(bf16_arr, floats.type)
assert casted == floats
def test_bf16_fixed_size_list_cast():
for dt in [np.float16, np.float32, np.float64]:
floats = pa.array(np.array([1.0, 2.0, 3.0, 4.0], dtype=dt))
fsl = pa.FixedSizeListArray.from_arrays(floats, 2)
bf16_fsl = lance.arrow.cast(fsl, pa.list_(lance.arrow.BFloat16Type(), 2))
assert bf16_fsl.values == BFloat16Array.from_numpy(
np.array([1.0, 2.0, 3.0, 4.0], dtype=bfloat16)
)
casted = lance.arrow.cast(bf16_fsl, fsl.type)
assert casted == fsl
def test_bf16_roundtrip(tmp_path: Path):
import numpy as np
from ml_dtypes import bfloat16
values = BFloat16Array.from_numpy(np.random.random(9).astype(bfloat16))
vectors = pa.FixedSizeListArray.from_arrays(values, 3)
tensors = pa.ExtensionArray.from_storage(
pa.fixed_shape_tensor(values.type, [3]), vectors
)
data = pa.table(
{
"values": values.slice(0, 3),
"vector": vectors,
"tensors": tensors,
}
)
ds = lance.write_dataset(data, tmp_path)
assert ds.schema == data.schema
assert ds.to_table() == data
def test_roundtrip_take_ext_types(tmp_path: Path):
tensor_type = pa.fixed_shape_tensor(pa.float32(), [2, 3])
inner = pa.array([float(x) for x in range(0, 18)], pa.float32())
storage = pa.FixedSizeListArray.from_arrays(inner, 6)
tensor_arr = pa.ExtensionArray.from_storage(tensor_type, storage)
tbl = pa.Table.from_arrays([tensor_arr], ["tensor"])
lance.write_dataset(tbl, tmp_path)
tbl2 = lance.dataset(tmp_path)
rows = tbl2.take([0, 2])
assert rows["tensor"].to_pylist() == [
[0.0, 1.0, 2.0, 3.0, 4.0, 5.0],
[12.0, 13.0, 14.0, 15.0, 16.0, 17.0],
]
def test_struct_variable_children_roundtrip(tmp_path: Path):
struct_type = pa.struct(
[
pa.field("id", pa.int32()),
pa.field("text", pa.utf8()),
pa.field("payload", pa.binary()),
]
)
struct_field = pa.field(
"record",
struct_type,
metadata={"lance-encoding:packed": "true"},
)
struct_array = pa.StructArray.from_arrays(
[
pa.array([1, 2, 3, 4], pa.int32()),
pa.array(["alpha", "beta", "gamma", "delta"], pa.utf8()),
pa.array(
[b"\x01\x02", b"\xff", b"\x03\x04\x05", b"\x10"],
type=pa.binary(),
),
],
type=struct_type,
)
table = pa.Table.from_arrays([struct_array], schema=pa.schema([struct_field]))
dataset_uri = tmp_path / "struct.lance"
ds = lance.write_dataset(table, dataset_uri, data_storage_version="2.2")
round_trip = ds.to_table()
assert round_trip.schema == table.schema
assert round_trip.equals(table)
assert round_trip.to_pylist() == table.to_pylist()
data_file = next((dataset_uri / "data").glob("*.lance"))
metadata = LanceFileReader(str(data_file)).metadata()
encodings = [page.encoding for page in metadata.columns[0].pages]
assert any("VariablePackedStruct" in encoding for encoding in encodings)
@pytest.fixture
def png_uris():
local_path = "file://" + os.path.join(os.path.dirname(__file__), "images/1.png")
png_uris = [local_path] * 10
if os.name == "nt":
png_uris = [str(Path(x)) for x in png_uris]
return png_uris
def test_image_uri_arrays(tmp_path: Path, png_uris):
from_list = ImageURIArray.from_uris(png_uris)
from_pyarrow = ImageURIArray.from_uris(pa.array(png_uris, pa.string()))
from_pyarrow_large = ImageURIArray.from_uris(pa.array(png_uris, pa.large_string()))
for arr in [from_list, from_pyarrow, from_pyarrow_large]:
assert arr.to_pylist() == png_uris
image_array = ImageURIArray.from_uris(png_uris)
assert ImageArray.from_array(image_array) == image_array
encoded_image_array = image_array.read_uris()
assert len(ImageArray.from_array(encoded_image_array.storage)) == 10
assert ImageArray.from_array(encoded_image_array) == encoded_image_array
large_array = encoded_image_array.storage.cast(pa.large_binary())
large_array = ImageArray.from_array(large_array)
assert large_array.to_pylist() == encoded_image_array.to_pylist()
def test_image_tensor_arrays(tmp_path: Path, png_uris):
tf = pytest.importorskip("tensorflow")
n = 10
encoded_image_array = ImageURIArray.from_uris(png_uris).read_uris()
tensor_image_array = encoded_image_array.to_tensor()
fixed_shape_tensor_array = pa.ExtensionArray.from_storage(
pa.fixed_shape_tensor(
tensor_image_array.storage.type.value_type, tensor_image_array.type.shape
),
tensor_image_array.storage,
)
assert (
ImageArray.from_array(fixed_shape_tensor_array).storage
== fixed_shape_tensor_array.storage
)
assert ImageArray.from_array(tensor_image_array) == tensor_image_array
assert len(ImageArray.from_array(tensor_image_array)) == n
assert len(tensor_image_array) == n
assert tensor_image_array.storage.type == pa.list_(pa.uint8(), 4)
assert tensor_image_array[2].as_py() == [42, 42, 42, 255]
test_tensor = tf.constant(
np.array([42, 42, 42, 255] * n, dtype=np.uint8).reshape((n, 1, 1, 4))
)
assert test_tensor.shape == (n, 1, 1, 4)
assert tf.math.reduce_all(
tf.convert_to_tensor(tensor_image_array.to_numpy()) == test_tensor
)
assert tensor_image_array.to_encoded().to_tensor() == tensor_image_array
def png_encoder(images):
import tensorflow as tf
encoded_images = (
tf.io.encode_png(x).numpy() for x in tf.convert_to_tensor(images)
)
return pa.array(encoded_images, type=pa.binary())
assert tensor_image_array.to_encoded(png_encoder).to_tensor() == tensor_image_array
uris = [
"file://" + os.path.join(os.path.dirname(__file__), "images/1.png"),
"file://" + os.path.join(os.path.dirname(__file__), "images/2.jpeg"),
]
if os.name == "nt":
uris = [str(Path(x)) for x in uris]
encoded_image_array = ImageArray.from_array(uris).read_uris()
with pytest.raises(
tf.errors.InvalidArgumentError, match="Shapes of all inputs must match"
):
encoded_image_array.to_tensor()
pattern = r"(object at) 0x[\w\d]+(:?>)"
repl = r"\1 0x..\2"
assert re.sub(pattern, repl, encoded_image_array.__repr__()) == (
"<lance.arrow.EncodedImageArray object at 0x..>\n"
"[<tf.Tensor: shape=(1, 1, 4), dtype=uint8, numpy=array([[[ 42, 42, 42, "
"255]]], dtype=uint8)>, ..]\n"
"b'\\x89PNG\\r\\n\\x1a\\n\\x00\\x00\\x00\\rIHDR\\x00\\x00\\x00\\x01\\x00\\x00"
"\\x00\\x01\\x08\\x06\\x00\\x00\\x00\\x1f'"
)
def test_roundtrip_image_tensor(tmp_path: Path):
import os
png_uris = [
os.path.join(os.path.dirname(__file__), "images/1.png"),
] * 5
uri_array = ImageURIArray.from_uris(png_uris)
encoded_image_array = uri_array.read_uris()
tensor_image_array = encoded_image_array.to_tensor()
tbl = pa.Table.from_arrays(
[uri_array, encoded_image_array, tensor_image_array],
["uri_array", "encoded_image_array", "tensor_image_array"],
)
lance.write_dataset(tbl, tmp_path)
tbl2 = lance.dataset(tmp_path)
indices = list(range(len(png_uris)))
assert tbl.take(indices).to_pylist() == tbl2.take(indices).to_pylist()
tensor_image_array_2 = tbl2.take(indices).column(2)
assert tensor_image_array_2.type == tensor_image_array.type
def test_image_array_pickle(tmp_path: Path, png_uris):
# Note: this test will only fail in PyArrow 12.0.0. It was fixed in 13.0.0.
uri_array = ImageURIArray.from_uris(png_uris)
encoded_array = uri_array.read_uris()
tensor_array = pa.FixedShapeTensorArray.from_numpy_ndarray(
np.random.random((10, 1, 1, 4)).astype(np.uint8)
)
tensor_array = pa.ExtensionArray.from_storage(
FixedShapeImageTensorType(pa.uint8(), tensor_array.type.shape),
tensor_array.storage,
)
arrays = [uri_array, encoded_array, tensor_array]
for arr in arrays:
data = pickle.dumps(arr)
arr2 = pickle.loads(data)
assert arr == arr2