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194 lines (168 loc) · 6.18 KB
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# cython: language_level=3
import sys
import numpy as np
cimport numpy as np
from cython cimport view
from libc.stdlib cimport malloc, calloc
from libc.string cimport memcpy
sr = 1.
cdef extern from "PythonParamConfig.h":
enum paramType:
TOGGLE, INT_SET, FLOAT_RANGE
cdef extern from "PythonParamConfig.h":
struct ParamConfig:
paramType type
char *name
int isEnabled
int nEntries
int *entries
float rangeMin
float rangeMax
float startValue
cdef extern from "PythonEvent.h":
struct PythonEvent:
unsigned char type
int sampleNum
unsigned char eventId
unsigned char eventChannel
unsigned char numBytes
unsigned char *eventData
PythonEvent *nextEvent
# noinspection PyPep8Naming
cdef public void pluginStartup(int nChans, float samplingRate, int *chanStates):
print("pre anything")
global isDebug
print("after is debug")
global pluginOp
cdef bint[:] states
if nChans == 0:
# pointer might be null
pluginOp.startup(nChans, samplingRate, [])
else:
states = <bint[:nChans]>(<bint*> chanStates)
pluginOp.startup(nChans, samplingRate, states)
# noinspection PyPep8Naming
cdef public int getParamNum():
return len(pluginOp.param_config())
# noinspection PyPep8Naming
cdef public void getParamConfig(ParamConfig *params):
cdef int *ent
cdef char * par_name
cdef size_t par_len
ppc = pluginOp.param_config()
for i in range(len(ppc)):
par = ppc[i]
print("par[0], ", par[0])
print("par[1], ", par[1])
print("par[2], ", par[2])
par_len = len(par[1])+1
print("par len: ",par_len)
par_name = <char *>malloc(par_len)
par_bytes = par[1].encode('utf-8')
print("par_bytes: ", par_bytes)
print("par_name 1: ", par_name)
memcpy(par_name, <char*>par_bytes, int(par_len-1))
#par_name = par_bytes
par_name[par_len-1] = 0
print("par_name 2: ", par_name)
if par[0] == "toggle":
params[i].type = TOGGLE
params[i].name = par_name
params[i].isEnabled = par[2]
elif par[0] == "int_set":
params[i].type = INT_SET
params[i].name = par_name
params[i].nEntries = len(par[2])
ent = <int *> malloc (sizeof (int) * len(par[2]) )
for k in range(len(par[2])):
ent[k] = par[2][k]
params[i].entries = ent
elif par[0] == "float_range":
params[i].type = FLOAT_RANGE
params[i].name = par_name
params[i].rangeMin = par[2]
params[i].rangeMax = par[3]
params[i].startValue = par[4]
# noinspection PyPep8Naming
cdef public void pluginFunction(float *data_buffer, int nChans, int nSamples, int nRealSamples, PythonEvent *events):
global sr
n_arr = np.asarray(<np.float32_t[:nChans, :nSamples]> data_buffer)
#pluginOp.set_events(events)
#pm2 = PluginModule(pm)
if isDebug:
print("sr: ", sr)
samples_to_read = nRealSamples
events_to_add = []
if samples_to_read > 0:
events_to_add = pluginOp.bufferfunction(n_arr[:,0:samples_to_read])
# struct PythonEvent:
# unsigned char type
# int sampleNum
# unsigned char eventId
# unsigned char eventChannel
# unsigned char numBytes
# unsigned char *eventData
# PythonEvent *nextEvent
if len(events_to_add) > 0:
e_py = events_to_add[0]
e_c = events
add_event(e_c, e_py)
if isDebug:
print("in Plugin, event ", e_c.eventId, " added")
last_e_c = e_c
for i in range(1,len(events_to_add)):
e_py = events_to_add[i]
e_c = <PythonEvent *>calloc(1, sizeof(PythonEvent))
if isDebug:
print("in Plugin, event ", e_c.eventId, " added")
last_e_c.nextEvent = e_c
add_event(e_c, e_py)
last_e_c = e_c
last_e_c.nextEvent = NULL
# noinspection PyPep8Naming
cdef public void eventFunction(int eventType, int sourceID, int subProcessorIdx, double timestamp, int sourceIndex):
pluginOp.handleEvents(eventType,sourceID,subProcessorIdx,timestamp,sourceIndex)
# noinspection PyPep8Naming
cdef public void spikeFunction(int electrode, int sortedID, float[18] spikeSample):
n_arr = np.asarray(<np.float32_t[:1, :18]> spikeSample)
pluginOp.handleSpike(electrode,sortedID,n_arr)
cdef void add_event(PythonEvent *e_c, object e_py):
e_c.type = <unsigned char>e_py['type']
e_c.sampleNum = <int>e_py['sampleNum']
if 'eventId' in e_py:
e_c.eventId = <unsigned char>e_py['eventId']
if 'eventChannel' in e_py:
e_c.eventChannel = <unsigned char>e_py['eventChannel']
if 'numBytes' in e_py:
e_c.numBytes = <unsigned char>e_py['numBytes']
if 'eventData' in e_py:
e_c.eventData = <unsigned char *>e_py['eventData']
# TODO to be tested if this works with a numpy input
cdef public int pluginisready():
return pluginOp.is_ready()
# called from C++ updateSettings (not during acquisition)
cdef public void updateSettings(int nChans, float samplingRate):
pluginOp.update_settings(nChans, samplingRate)
# called any time param button is changed (maybe during acquisition)
cdef public void channelChanged(int chan, int newState):
pluginOp.channel_changed(chan, <bint>newState)
# noinspection PyPep8Naming
cdef public void setIntParam(char *name, int value):
if isDebug:
print("In Python: ", name, ": ", value)
setattr(pluginOp, name.decode('utf-8'), value)
# noinspection PyPep8Naming
cdef public void setFloatParam(char *name, float value):
# print ("In Python: ", name, ": ", value)
setattr(pluginOp, name.decode('utf-8'), value)
# noinspection PyPep8Naming
cdef public int getIntParam(char *name):
if isDebug:
print("In Python getIntParam: ", name)
value = getattr(pluginOp, name.decode('utf-8'))
return <int>value
# noinspection PyPep8Naming
cdef public float getFloatParam(char *name):
# print( "In Python: ", name, ": ", value)
value = getattr(pluginOp, name.decode('utf-8'))
return <float>value