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sparse_matrix_builder.rs
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393 lines (349 loc) · 12.5 KB
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use std::cell::RefCell;
use std::cmp::Reverse;
use std::collections::HashMap;
use std::hash::BuildHasherDefault;
use std::sync::atomic::{AtomicUsize, Ordering};
use dashmap::DashMap;
use itertools::Itertools;
use rayon::iter::IntoParallelIterator;
use rayon::iter::IntoParallelRefIterator;
use rayon::iter::ParallelDrainFull;
use rayon::iter::ParallelIterator;
use rayon::prelude::ParallelSliceMut;
use rayon::ThreadPoolBuilder;
use rustc_hash::FxHasher;
use smallvec::SmallVec;
use crate::entity::{Hyperedge, SMALL_VECTOR_SIZE};
use crate::sparse_matrix::{Edge, Entity, SparseMatrix, SparseMatrixDescriptor};
#[derive(Debug, Default)]
struct Row {
occurrence: u32,
row_sum: f32,
}
#[derive(Debug, Default)]
pub struct NodeIndexer {
pub key_2_index: HashMap<u64, usize, BuildHasherDefault<FxHasher>>,
pub index_2_key: Vec<u64>,
pub index_2_entity_id: Vec<String>,
pub index_2_column_id: Vec<u8>,
}
pub trait NodeIndexerBuilder {
fn process(&self, key: u64, entity_id: &str, column_id: u8);
fn finish(self) -> NodeIndexer;
}
#[derive(Debug)]
pub struct SyncNodeIndexerBuilder {
node_indexer: RefCell<NodeIndexer>,
}
impl Default for SyncNodeIndexerBuilder {
fn default() -> Self {
SyncNodeIndexerBuilder {
node_indexer: RefCell::new(NodeIndexer {
key_2_index: Default::default(),
index_2_key: vec![],
index_2_column_id: vec![],
index_2_entity_id: vec![],
}),
}
}
}
impl NodeIndexerBuilder for SyncNodeIndexerBuilder {
fn process(&self, key: u64, entity_id: &str, column_id: u8) {
let mut node_indexer = self.node_indexer.borrow_mut();
if node_indexer.key_2_index.contains_key(&key) {
return;
}
let index = node_indexer.key_2_index.len();
node_indexer.key_2_index.insert(key, index);
node_indexer.index_2_key.push(key);
node_indexer.index_2_entity_id.push(entity_id.to_string());
node_indexer.index_2_column_id.push(column_id);
}
fn finish(self) -> NodeIndexer {
self.node_indexer.into_inner()
}
}
#[derive(Debug)]
pub struct IndexedEntity {
index: usize,
id: String,
column_id: u8,
}
#[derive(Debug, Default)]
pub struct AsyncNodeIndexerBuilder {
key_2_entity: DashMap<u64, IndexedEntity, BuildHasherDefault<FxHasher>>,
next_index: AtomicUsize,
}
impl NodeIndexerBuilder for AsyncNodeIndexerBuilder {
fn process(&self, key: u64, entity_id: &str, column_id: u8) {
self.key_2_entity.entry(key).or_insert_with(|| {
let index = self.next_index.fetch_add(1, Ordering::Relaxed);
let id = entity_id.to_string();
IndexedEntity {
index,
id,
column_id,
}
});
}
fn finish(self) -> NodeIndexer {
let numel = self.next_index.into_inner();
let mut index_2_key: Vec<u64> = vec![0; numel];
let mut index_2_entity_id: Vec<Option<String>> = (0..numel).map(|_| None).collect();
let mut index_2_column_id: Vec<u8> = vec![0; numel];
let key_2_index: HashMap<u64, usize, BuildHasherDefault<FxHasher>> = self
.key_2_entity
.into_iter()
.map(|(key, indexed_entity)| {
let IndexedEntity {
index,
id: entity_id,
column_id,
} = indexed_entity;
index_2_key[index] = key;
index_2_entity_id[index] = Some(entity_id);
index_2_column_id[index] = column_id;
(key, index)
})
.collect();
let index_2_entity_id: Vec<String> = index_2_entity_id
.into_iter()
.map(|opt| opt.unwrap_or_default())
.collect();
NodeIndexer {
key_2_index,
index_2_key,
index_2_entity_id,
index_2_column_id,
}
}
}
impl SparseMatrixDescriptor {
pub fn new(col_a_id: u8, col_a_name: String, col_b_id: u8, col_b_name: String) -> Self {
Self {
col_a_id,
col_a_name,
col_b_id,
col_b_name,
}
}
pub fn make_buffer(&self, hyperedge_trim_n: usize) -> SparseMatrixBuffer {
SparseMatrixBuffer {
descriptor: self.clone(),
edge_count: 0,
hash_2_row: Default::default(),
hashes_2_edge: Default::default(),
hyperedge_trim_n,
}
}
}
#[derive(Debug)]
pub struct SparseMatrixBuffer {
pub descriptor: SparseMatrixDescriptor,
pub edge_count: u32,
hash_2_row: HashMap<u64, Row, BuildHasherDefault<FxHasher>>,
hashes_2_edge: HashMap<(u64, u64), f32, BuildHasherDefault<FxHasher>>,
hyperedge_trim_n: usize,
}
impl SparseMatrixBuffer {
pub fn handle_hyperedge(&mut self, hyperedge: &Hyperedge) {
let SparseMatrixDescriptor {
col_a_id, col_b_id, ..
} = self.descriptor;
let total_combinations = hyperedge.edges_num(col_a_id, col_b_id) as u32;
let mut nodes_a = hyperedge.nodes(col_a_id as usize);
let mut nodes_b = hyperedge.nodes(col_b_id as usize);
for hash in &nodes_a {
self.update_row(*hash, nodes_b.len() as u32);
}
for hash in &nodes_b {
self.update_row(*hash, nodes_a.len() as u32);
}
let value = 1f32 / (total_combinations as f32);
let (nodes_a_high, nodes_a_low) = self.get_high_low_nodes(&mut nodes_a);
let (nodes_b_high, nodes_b_low) = self.get_high_low_nodes(&mut nodes_b);
self.handle_combinations(nodes_a_high, nodes_b_high, value);
self.handle_combinations(nodes_a_high, nodes_b_low, value);
self.handle_combinations(nodes_a_low, nodes_b_high, value);
}
fn get_high_low_nodes<'a>(
&self,
nodes: &'a mut SmallVec<[u64; SMALL_VECTOR_SIZE]>,
) -> (&'a [u64], &'a [u64]) {
if nodes.len() > self.hyperedge_trim_n {
nodes.select_nth_unstable_by_key(self.hyperedge_trim_n, |h| {
Reverse(self.hash_2_row.get(h).map_or(0, |r| r.occurrence))
});
nodes.split_at(self.hyperedge_trim_n)
} else {
(nodes, &[])
}
}
fn handle_combinations(&mut self, a_hashes: &[u64], b_hashes: &[u64], value: f32) {
for a_hash in a_hashes {
for b_hash in b_hashes {
self.add_pair_symmetric(*a_hash, *b_hash, value);
}
}
}
fn add_pair_symmetric(&mut self, a_hash: u64, b_hash: u64, value: f32) {
self.edge_count += 1;
self.update_edge(a_hash, b_hash, value);
self.update_edge(b_hash, a_hash, value);
}
fn update_row(&mut self, hash: u64, count: u32) {
let val = 1f32 / (count as f32);
let e = self.hash_2_row.entry(hash).or_default();
e.occurrence += count;
e.row_sum += val
}
fn update_edge(&mut self, a_hash: u64, b_hash: u64, val: f32) {
let e = self.hashes_2_edge.entry((a_hash, b_hash)).or_default();
*e += val;
}
}
#[derive(Debug)]
pub struct SparseMatrixBuffersReducer {
descriptor: SparseMatrixDescriptor,
buffers: Vec<SparseMatrixBuffer>,
node_indexer: NodeIndexer,
num_workers: usize,
}
pub struct EdgeEntry {
pub row: u32,
pub col: u32,
pub value: f32,
}
impl SparseMatrixBuffersReducer {
pub fn new(
node_indexer: NodeIndexer,
buffers: Vec<SparseMatrixBuffer>,
num_workers: usize,
) -> Self {
if buffers.is_empty() {
panic!("Cannot reduce 0 buffers")
}
let descriptor = buffers[0].descriptor.clone();
for buffer in &buffers {
if descriptor != buffer.descriptor {
panic!("Can only reduce buffers with the same sparse matrix description")
}
}
Self {
descriptor,
buffers,
node_indexer,
num_workers,
}
}
pub fn reduce(self) -> SparseMatrix {
ThreadPoolBuilder::new()
.num_threads(self.num_workers)
.build()
.unwrap()
.install(|| {
let node_indexer = self.node_indexer;
let (hash_2_row_maps, hashes_2_edge_map): (Vec<_>, Vec<_>) = self
.buffers
.into_iter()
.map(|b| (b.hash_2_row, b.hashes_2_edge))
.unzip();
let entities =
SparseMatrixBuffersReducer::reduce_to_entities(&node_indexer, hash_2_row_maps);
let mut edges: Vec<_> =
SparseMatrixBuffersReducer::reduce_to_edges(&node_indexer, hashes_2_edge_map);
edges.par_sort_by_key(|entry| (entry.row, entry.col));
let slices: Vec<_> = edges
.iter()
.enumerate()
.group_by(|(_, entry)| entry.row)
.into_iter()
.map(|(_, mut group)| {
let first = group.next().expect("Group have at least one element");
let last = group.last().unwrap_or(first);
(first.0, last.0 + 1)
})
.collect();
let mut edges: Vec<_> = edges
.into_par_iter()
.map(|entry| Edge {
other_entity_ix: entry.col,
left_markov_value: entry.value,
symmetric_markov_value: 0.0,
})
.collect();
slices
.iter()
.enumerate()
.for_each(|(row_ix, (start_ix, end_ix))| {
let row_sum = entities[row_ix].row_sum;
let slice = &mut edges[(*start_ix)..(*end_ix)];
slice.iter_mut().for_each(|edge| {
let value = edge.left_markov_value;
let left_markov_normalization = row_sum;
let symmetric_markov_normalization = {
let col_sum = entities[edge.other_entity_ix as usize].row_sum;
(row_sum * col_sum).sqrt()
};
edge.left_markov_value = value / left_markov_normalization;
edge.symmetric_markov_value = value / symmetric_markov_normalization;
})
});
SparseMatrix {
descriptor: self.descriptor,
entity_ids: node_indexer.index_2_entity_id,
column_ids: node_indexer.index_2_column_id,
entities,
edges,
slices,
}
})
}
fn reduce_to_entities(
node_indexer: &NodeIndexer,
entity_maps: Vec<HashMap<u64, Row, BuildHasherDefault<FxHasher>>>,
) -> Vec<Entity> {
node_indexer
.index_2_key
.par_iter()
.map(|hash| {
let mut entity_agg = Entity { row_sum: 0.0 };
for entity_map in entity_maps.iter() {
if let Some(entity) = entity_map.get(hash) {
entity_agg.row_sum += entity.row_sum;
}
}
entity_agg
})
.collect()
}
fn reduce_to_edges(
node_indexer: &NodeIndexer,
edge_maps: Vec<HashMap<(u64, u64), f32, BuildHasherDefault<FxHasher>>>,
) -> Vec<EdgeEntry> {
let reduced_edge_map: DashMap<(u64, u64), f32, BuildHasherDefault<FxHasher>> =
Default::default();
for mut edge_map in edge_maps.into_iter() {
edge_map.par_drain().for_each(|(k, v)| {
reduced_edge_map
.entry(k)
.and_modify(|rv| *rv += v)
.or_insert(v);
})
}
reduced_edge_map
.into_par_iter()
.map(|((row_hash, col_hash), value)| {
let row = *node_indexer
.key_2_index
.get(&row_hash)
.expect("Hash value was indexed") as u32;
let col = *node_indexer
.key_2_index
.get(&col_hash)
.expect("Hash value was indexed") as u32;
EdgeEntry { row, col, value }
})
.collect()
}
}