-
Notifications
You must be signed in to change notification settings - Fork 61
Expand file tree
/
Copy pathsimdvariablebyte.h
More file actions
493 lines (456 loc) · 15.6 KB
/
Copy pathsimdvariablebyte.h
File metadata and controls
493 lines (456 loc) · 15.6 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
/**
* (c) Part of the copyright is to Indeed.com
* Licensed under the Apache License Version 2.0
*/
/*
* Based on an initial design by Jeff Plaisance and
* improved by Nathan Kurz.
*/
#ifndef SIMDCompressionAndIntersection_SIMDVARIABLEBYTE_H_
#define SIMDCompressionAndIntersection_SIMDVARIABLEBYTE_H_
#include "common.h"
#include "codecs.h"
#include "util.h"
namespace SIMDCompressionLib {
extern "C" {
size_t masked_vbyte_read_loop(const uint8_t *in, uint32_t *out,
uint64_t length);
size_t masked_vbyte_read_loop_delta(const uint8_t *in, uint32_t *out,
uint64_t length, uint32_t prev);
size_t masked_vbyte_read_loop_fromcompressedsize(const uint8_t *in,
uint32_t *out,
size_t inputsize);
size_t masked_vbyte_read_loop_fromcompressedsize_delta(const uint8_t *in,
uint32_t *out,
size_t inputsize,
uint32_t prev);
// size_t read_ints(const uint8_t* in, uint32_t* out, int length) ;
// size_t read_ints_delta(const uint8_t* in, uint32_t* out, int length, uint32_t
// prev) ;
uint32_t masked_vbyte_select_delta(const uint8_t *in, uint64_t length,
uint32_t prev, size_t slot);
int masked_vbyte_search_delta(const uint8_t *in, uint64_t length, uint32_t prev,
uint32_t key, uint32_t *presult);
}
/**
* This is a SIMD-accelerated version that is byte-by-byte format compatible
* with
* the VByte codec (that is, standard vbyte).
*/
template <bool delta> class MaskedVByte : public IntegerCODEC {
public:
MaskedVByte() {}
void encodeArray(uint32_t *in, const size_t length, uint32_t *out,
size_t &nvalue) {
const uint8_t *const initbout = reinterpret_cast<uint8_t *>(out);
*out = static_cast<uint32_t>(length);
out++;
uint8_t *bout = reinterpret_cast<uint8_t *>(out);
uint32_t prev = 0;
for (size_t k = 0; k < length; ++k) {
const uint32_t val = delta ? (in[k] - prev) : in[k];
if (delta)
prev = in[k];
/**
* Code below could be shorter. Whether it could be faster
* depends on your compiler and machine.
*/
if (val < (1U << 7)) {
*bout = val & 0x7F;
++bout;
} else if (val < (1U << 14)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 7);
++bout;
} else if (val < (1U << 21)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 14);
++bout;
} else if (val < (1U << 28)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 14) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 21);
++bout;
} else {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 14) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 21) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 28);
++bout;
}
}
while (needPaddingTo32Bits(bout)) {
*bout++ = 0xff;
}
const size_t storageinbytes = bout - initbout;
nvalue = storageinbytes / 4;
}
const uint32_t *decodeArray(const uint32_t *in, const size_t length,
uint32_t *out, size_t &nvalue) {
nvalue = *in;
const uint8_t *inbyte =
decodeFromByteArray((const uint8_t *)in, length, out, nvalue);
inbyte = padTo32bits(inbyte);
return reinterpret_cast<const uint32_t *>(inbyte);
}
// Same as above, but operates on byte arrays (uint8_t *) and avoids
// the padding at the end
const uint8_t *decodeFromByteArray(const uint8_t *in,
const size_t /* length */, uint32_t *out,
size_t &nvalue) {
nvalue = *(uint32_t *)in;
in += sizeof(uint32_t);
if (nvalue == 0) {
return in; // abort
}
if (delta) {
uint32_t prev = 0;
in += masked_vbyte_read_loop_delta(in, out, nvalue, prev);
} else
in += masked_vbyte_read_loop(in, out, nvalue);
return in;
}
// append a key. Keys must be in sorted order. We assume that there is
// enough room and that delta encoding was used.
// Returns the new size of the compressed array *in bytes*
size_t appendToByteArray(uint8_t *in, size_t bytesize, uint32_t previous_key,
uint32_t key) {
uint32_t num_ints = *(uint32_t *)in;
if (bytesize == 0)
bytesize = 4;
uint8_t *bytein = in + bytesize;
bytein += encodeOneIntegerToByteArray(key - previous_key, bytein);
*(uint32_t *)in = num_ints + 1;
return bytein - in;
}
// Returns a decompressed value in a delta-encoded array
// only supported for delta encoded data (TODO)
uint32_t select(uint32_t *in, size_t index) {
assert(delta == true);
uint32_t num_ints = *in;
in++;
return (masked_vbyte_select_delta((uint8_t *)in, num_ints, 0, index));
}
// Performs a lower bound find in the delta-encoded array.
// Returns the index
// length is the size of the compressed input
// only supported for delta encoded data (TODO)
size_t findLowerBound(const uint32_t *in, const size_t /*length*/,
uint32_t key, uint32_t *presult) {
assert(delta == true);
uint32_t num_ints = *in;
in++;
return (
masked_vbyte_search_delta((uint8_t *)in, num_ints, 0, key, presult));
}
// insert the key in sorted order. We assume that there is enough room
// and that delta encoding was used.
size_t insert(uint32_t *in, const size_t length, uint32_t key) {
assert(delta);
size_t bytesize = length * 4;
bytesize -= paddingBytes(in, length);
uint8_t *bytein = (uint8_t *)in;
uint8_t *byteininit = bytein;
bytein += insert(bytein, bytesize, key);
while (needPaddingTo32Bits(bytein)) {
*bytein++ = 0xFF;
}
size_t storageinbytes = bytein - byteininit;
assert((storageinbytes % 4) == 0);
return storageinbytes / 4;
}
// insert the key in sorted order. We assume that there is enough room and
// that delta encoding was used.
// the new size (in *byte) is returned
size_t insertInByteArray(uint8_t *inbyte, const size_t length, uint32_t key) {
uint32_t prev = 0;
assert(delta);
const uint8_t *const endbyte =
reinterpret_cast<const uint8_t *>(inbyte + length);
// this assumes that there is a value to be read
while (endbyte > inbyte + 5) {
uint8_t c;
uint32_t v;
c = inbyte[0];
v = c & 0x7F;
if (c < 128) {
inbyte += 1;
prev = v + prev;
if (prev >= key) {
return length +
__insert(inbyte, prev - v, key, prev, endbyte - inbyte);
}
continue;
}
c = inbyte[1];
v |= (c & 0x7F) << 7;
if (c < 128) {
inbyte += 2;
prev = v + prev;
if (prev >= key) {
return length +
__insert(inbyte, prev - v, key, prev, endbyte - inbyte);
}
continue;
}
c = inbyte[2];
v |= (c & 0x7F) << 14;
if (c < 128) {
inbyte += 3;
prev = v + prev;
if (prev >= key) {
return length +
__insert(inbyte, prev - v, key, prev, endbyte - inbyte);
}
continue;
}
c = inbyte[3];
v |= (c & 0x7F) << 21;
if (c < 128) {
inbyte += 4;
prev = v + prev;
if (prev >= key) {
return length +
__insert(inbyte, prev - v, key, prev, endbyte - inbyte);
}
continue;
}
c = inbyte[4];
inbyte += 5;
v |= (c & 0x0F) << 28;
prev = v + prev;
if (prev >= key) {
return length + __insert(inbyte, prev - v, key, prev, endbyte - inbyte);
}
}
while (endbyte > inbyte) {
unsigned int shift = 0;
for (uint32_t v = 0; endbyte > inbyte; shift += 7) {
uint8_t c = *inbyte++;
v += ((c & 127) << shift);
if ((c < 128)) {
prev = v + prev;
if (prev >= key) {
return length +
__insert(inbyte, prev - v, key, prev, endbyte - inbyte);
}
break;
}
}
}
// if we make it here, then we need to append
assert(key >= prev);
return length + encodeOneIntegerToByteArray(key - prev, inbyte);
}
std::string name() const {
if (delta)
return "MaskedVByteDelta";
else
return "MaskedVByte";
}
private:
// convenience function used by insert, writes key and newvalue to compressed
// stream, and return
// extra storage used, pointer should be right after where nextvalue is right
// now
size_t __insert(uint8_t *in, uint32_t previous, uint32_t key,
uint32_t nextvalue, size_t followingbytes) {
assert(nextvalue >= key);
assert(key >= previous);
size_t oldstorage = storageCost(nextvalue - previous);
size_t newstorage =
storageCost(nextvalue - key) + storageCost(key - previous);
assert(newstorage >= oldstorage);
if (newstorage > oldstorage)
std::memmove(in + newstorage - oldstorage, in, followingbytes);
uint8_t *newin = in - oldstorage;
newin += encodeOneIntegerToByteArray(key - previous, newin);
newin += encodeOneIntegerToByteArray(nextvalue - key, newin);
assert(newin == in + newstorage - oldstorage);
return newstorage - oldstorage;
}
// how many bytes are required to store this integer?
int storageCost(uint32_t val) {
if (val < (1U << 7)) {
return 1;
} else if (val < (1U << 14)) {
return 2;
} else if (val < (1U << 21)) {
return 3;
} else if (val < (1U << 28)) {
return 4;
} else {
return 5;
}
}
template <uint32_t i> uint8_t extract7bits(const uint32_t val) {
return static_cast<uint8_t>((val >> (7 * i)) & ((1U << 7) - 1));
}
template <uint32_t i> uint8_t extract7bitsmaskless(const uint32_t val) {
return static_cast<uint8_t>((val >> (7 * i)));
}
// determine how many padding bytes were used
int paddingBytes(const uint32_t *in, const size_t length) {
if (length == 0)
return 0;
uint32_t lastword = in[length - 1];
if (lastword < (1U << 8)) {
return 3;
} else if (lastword < (1U << 16)) {
return 2;
} else if (lastword < (1U << 24)) {
return 1;
}
return 0;
}
// write one compressed integer (without differential coding)
// returns the number of bytes written
size_t encodeOneIntegerToByteArray(uint32_t val, uint8_t *bout) {
const uint8_t *const initbout = bout;
if (val < (1U << 7)) {
*bout = val & 0x7F;
++bout;
} else if (val < (1U << 14)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 7);
++bout;
} else if (val < (1U << 21)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 14);
++bout;
} else if (val < (1U << 28)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 14) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 21);
++bout;
} else {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 14) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 21) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 28);
++bout;
}
return bout - initbout;
}
};
// this version differs from MaskedVByte in that it does not write out the
// number of integers compressed as part of a header.
template <bool delta> class HeadlessMaskedVByte : public IntegerCODEC {
public:
HeadlessMaskedVByte() {}
void encodeArray(uint32_t *in, const size_t length, uint32_t *out,
size_t &nvalue) {
const uint8_t *const initbout = reinterpret_cast<uint8_t *>(out);
uint8_t *bout = reinterpret_cast<uint8_t *>(out);
uint32_t prev = 0;
for (size_t k = 0; k < length; ++k) {
const uint32_t val = delta ? (in[k] - prev) : in[k];
if (delta)
prev = in[k];
/**
* Code below could be shorter. Whether it could be faster
* depends on your compiler and machine.
*/
if (val < (1U << 7)) {
*bout = val & 0x7F;
++bout;
} else if (val < (1U << 14)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 7);
++bout;
} else if (val < (1U << 21)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 14);
++bout;
} else if (val < (1U << 28)) {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 14) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 21);
++bout;
} else {
*bout = static_cast<uint8_t>((val & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 7) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 14) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(((val >> 21) & 0x7F) | (1U << 7));
++bout;
*bout = static_cast<uint8_t>(val >> 28);
++bout;
}
}
while (needPaddingTo32Bits(bout)) {
*bout++ = 0xFFU;
;
}
const size_t storageinbytes = bout - initbout;
nvalue = storageinbytes / 4;
}
const uint32_t *decodeArray(const uint32_t *in, const size_t length,
uint32_t *out, size_t &nvalue) {
if (length == 0) {
nvalue = 0;
return in; // abort
}
const uint8_t *inbyte = reinterpret_cast<const uint8_t *>(in);
if (delta) {
uint32_t prev = 0;
nvalue = masked_vbyte_read_loop_fromcompressedsize_delta(
inbyte, out, length * 4, prev);
} else {
nvalue =
masked_vbyte_read_loop_fromcompressedsize(inbyte, out, length * 4);
}
return in + length;
}
std::string name() const {
if (delta)
return "HeadlessMaskedVByteDelta";
else
return "HeadlessMaskedVByte";
}
private:
template <uint32_t i> uint8_t extract7bits(const uint32_t val) {
return static_cast<uint8_t>((val >> (7 * i)) & ((1U << 7) - 1));
}
template <uint32_t i> uint8_t extract7bitsmaskless(const uint32_t val) {
return static_cast<uint8_t>((val >> (7 * i)));
}
};
} // namespace SIMDCompressionLib
#endif /* SIMDCompressionAndIntersection_SIMDVARIABLEBYTE_H_ */