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/*----------------------------------------------------------------------------
*
* Copyright (C) 2017 Antonio Augusto Alves Junior
*
*
* This file is part of the Hydra.Python Analysis Framework.
*
* Hydra.Python is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Hydra.Python is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Hydra.Python. If not, see <http://www.gnu.org/licenses/>.
*
*---------------------------------------------------------------------------*/
/*
* bind_container.h
*
* Created on: 28 de jul de 2017
* Author: augalves
*/
/*
* @file
*
* @ingroup custom_binders
*
* @brief this file implements the hydra_vector bindings. It is largely based
* in the pybind11/stl_bind.h header, with the necessary adaptations
* to make it transparent to thrust and hydra.
*
* @todo
*
*/
#ifndef BIND_CONTAINER_H_
#define BIND_CONTAINER_H_
#include "pybind11/detail/common.h"
#include "pybind11/operators.h"
#include <thrust/find.h>
#include <thrust/count.h>
#include <algorithm>
#include <sstream>
#include <type_traits>
namespace hydra_python {
namespace detail {
/* SFINAE helper class used by 'is_comparable */
template <typename T> struct container_traits {
template <typename T2> static std::true_type test_comparable(decltype(std::declval<const T2 &>() == std::declval<const T2 &>())*);
template <typename T2> static std::false_type test_comparable(...);
template <typename T2> static std::true_type test_value(typename T2::value_type *);
template <typename T2> static std::false_type test_value(...);
template <typename T2> static std::true_type test_pair(typename T2::first_type *, typename T2::second_type *);
template <typename T2> static std::false_type test_pair(...);
static constexpr const bool is_comparable = std::is_same<std::true_type, decltype(test_comparable<T>(nullptr))>::value;
static constexpr const bool is_pair = std::is_same<std::true_type, decltype(test_pair<T>(nullptr, nullptr))>::value;
static constexpr const bool is_vector = std::is_same<std::true_type, decltype(test_value<T>(nullptr))>::value;
static constexpr const bool is_element = !is_pair && !is_vector;
};
/* Default: is_comparable -> std::false_type */
template <typename T, typename SFINAE = void>
struct is_comparable : std::false_type { };
/* For non-map data structures, check whether operator== can be instantiated */
template <typename T>
struct is_comparable<
T, pybind11::detail::enable_if_t<container_traits<T>::is_element &&
container_traits<T>::is_comparable>>
: std::true_type { };
/* For a vector/map data structure, recursively check the value type (which is std::pair for maps) */
template <typename T>
struct is_comparable<T, pybind11::detail::enable_if_t<container_traits<T>::is_vector>> {
static constexpr const bool value =
is_comparable<typename T::value_type>::value;
};
/* For pairs, recursively check the two data types */
template <typename T>
struct is_comparable<T, pybind11::detail::enable_if_t<container_traits<T>::is_pair>> {
static constexpr const bool value =
is_comparable<typename T::first_type>::value &&
is_comparable<typename T::second_type>::value;
};
/* Fallback functions */
template <typename, typename, typename... Args> void vector_if_copy_constructible(const Args &...) { }
template <typename, typename, typename... Args> void vector_if_equal_operator(const Args &...) { }
template <typename, typename, typename... Args> void vector_if_insertion_operator(const Args &...) { }
template <typename, typename, typename... Args> void vector_modifiers(const Args &...) { }
/*
void vector_if_copy_constructible(pybind11::detail::enable_if_t<
std::is_copy_constructible<Vector>::value &&
std::is_copy_constructible<typename Vector::value_type>::value, Class_> &cl) {
cl.def(pybind11::init<const Vector &>(), "Copy constructor");
}
*/
template<typename Vector, typename Class_>
void vector_if_copy_constructible(pybind11::detail::enable_if_t<pybind11::detail::is_copy_constructible<Vector>::value, Class_> &cl) {
cl.def(pybind11::init<const Vector &>(), "Copy constructor");
}
template<typename Vector, typename Class_>
void vector_if_equal_operator(pybind11::detail::enable_if_t<is_comparable<Vector>::value, Class_> &cl) {
using T = typename Vector::value_type;
cl.def(pybind11::detail::self == pybind11::detail::self);
cl.def(pybind11::detail::self != pybind11::detail::self);
cl.def("count",
[](const Vector &v, const T &x) {
return thrust::count(v.begin(), v.end(), x);
},
pybind11::arg("x"),
"Return the number of times ``x`` appears in the list"
);
cl.def("remove", [](Vector &v, const T &x) {
auto p = thrust::find(v.begin(), v.end(), x);
if (p != v.end())
v.erase(p);
else
throw pybind11::value_error();
},
pybind11::arg("x"),
"Remove the first item from the list whose value is x. "
"It is an error if there is no such item."
);
cl.def("__contains__",
[](const Vector &v, const T &x) {
return thrust::find(v.begin(), v.end(), x) != v.end();
},
pybind11::arg("x"),
"Return true the container contains ``x``"
);
}
// Vector modifiers -- requires a copyable vector_type:
// (Technically, some of these (pop and __delitem__) don't actually require copyability, but it seems
// silly to allow deletion but not insertion, so include them here too.)
template <typename Vector, typename Class_>
void vector_modifiers(pybind11::detail::enable_if_t<pybind11::detail::is_copy_constructible<typename Vector::value_type>::value, Class_> &cl) {
using T = typename Vector::value_type;
using SizeType = typename Vector::size_type;
using DiffType = typename Vector::difference_type;
cl.def("append",
[](Vector &v, const T &value) { v.push_back(value); },
pybind11::arg("x"),
"Add an item to the end of the list");
cl.def("__init__", [](Vector &v, pybind11::iterable it) {
new (&v) Vector();
try {
v.reserve(pybind11::len(it));
for (pybind11::handle h : it)
v.push_back(h.cast<T>());
} catch (...) {
v.~Vector();
throw;
}
});
cl.def("extend",
[](Vector &v, const Vector &src) {
v.insert(v.end(), src.begin(), src.end());
},
pybind11::arg("L"),
"Extend the list by appending all the items in the given list"
);
cl.def("insert",
[](Vector &v, SizeType i, const T &x) {
if (i > v.size())
throw pybind11::index_error();
v.insert(v.begin() + (DiffType) i, x);
},
pybind11::arg("i") , pybind11::arg("x"),
"Insert an item at a given position."
);
cl.def("pop",
[](Vector &v) {
if (v.empty())
throw pybind11::index_error();
T t = v.back();
v.pop_back();
return t;
},
"Remove and return the last item"
);
cl.def("pop",
[](Vector &v, SizeType i) {
if (i >= v.size())
throw pybind11::index_error();
T t = v[i];
v.erase(v.begin() + (DiffType) i);
return t;
},
pybind11::arg("i"),
"Remove and return the item at index ``i``"
);
cl.def("__setitem__",
[](Vector &v, SizeType i, const T &t) {
if (i >= v.size())
throw pybind11::index_error();
v[i] = t;
}
);
/// Slicing protocol
cl.def("__getitem__",
[](const Vector &v, pybind11::slice slice) -> Vector * {
size_t start, stop, step, slicelength;
if (!slice.compute(v.size(), &start, &stop, &step, &slicelength))
throw pybind11::error_already_set();
Vector *seq = new Vector();
seq->reserve((size_t) slicelength);
for (size_t i=0; i<slicelength; ++i) {
seq->push_back(v[start]);
start += step;
}
return seq;
},
pybind11::arg("s"),
"Retrieve list elements using a slice object"
);
cl.def("__setitem__",
[](Vector &v, pybind11::slice slice, const Vector &value) {
size_t start, stop, step, slicelength;
if (!slice.compute(v.size(), &start, &stop, &step, &slicelength))
throw pybind11::error_already_set();
if (slicelength != value.size())
throw std::runtime_error("Left and right hand size of slice assignment have different sizes!");
for (size_t i=0; i<slicelength; ++i) {
v[start] = value[i];
start += step;
}
},
"Assign list elements using a slice object"
);
cl.def("__delitem__",
[](Vector &v, SizeType i) {
if (i >= v.size())
throw pybind11::index_error();
v.erase(v.begin() + DiffType(i));
},
"Delete the list elements at index ``i``"
);
cl.def("__delitem__",
[](Vector &v, pybind11::slice slice) {
size_t start, stop, step, slicelength;
if (!slice.compute(v.size(), &start, &stop, &step, &slicelength))
throw pybind11::error_already_set();
if (step == 1 && false) {
v.erase(v.begin() + (DiffType) start, v.begin() + DiffType(start + slicelength));
} else {
for (size_t i = 0; i < slicelength; ++i) {
v.erase(v.begin() + DiffType(start));
start += step - 1;
}
}
},
"Delete list elements using a slice object"
);
}
// If the type has an operator[] that doesn't return a reference (most notably std::vector<bool>),
// we have to access by copying; otherwise we return by reference.
template <typename Vector> using vector_needs_copy = pybind11::detail::negation<
std::is_same<decltype(std::declval<Vector>()[typename Vector::size_type()]), typename Vector::value_type &>>;
// The usual case: access and iterate by reference
template <typename Vector, typename Class_>
void vector_accessor(pybind11::detail::enable_if_t<!vector_needs_copy<Vector>::value, Class_> &cl) {
using T = typename Vector::value_type;
using SizeType = typename Vector::size_type;
using ItType = typename Vector::iterator;
cl.def("__getitem__",
[](Vector &v, SizeType i) -> T & {
if (i >= v.size())
throw pybind11::index_error();
return v[i];
},
pybind11::return_value_policy::reference_internal // ref + keepalive
);
cl.def("__iter__",
[](Vector &v) {
return pybind11::make_iterator<
pybind11::return_value_policy::reference_internal, ItType, ItType, T&>(
v.begin(), v.end());
},
pybind11::keep_alive<0, 1>() /* Essential: keep list alive while iterator exists */
);
}
// The case for special objects, like std::vector<bool>, that have to be returned-by-copy:
template <typename Vector, typename Class_>
void vector_accessor(pybind11::detail::enable_if_t<vector_needs_copy<Vector>::value, Class_> &cl) {
using T = typename Vector::value_type;
using SizeType = typename Vector::size_type;
using ItType = typename Vector::iterator;
cl.def("__getitem__",
[](const Vector &v, SizeType i) -> T {
if (i >= v.size())
throw pybind11::index_error();
return v[i];
}
);
cl.def("__iter__",
[](Vector &v) {
return pybind11::make_iterator<
pybind11::return_value_policy::copy, ItType, ItType, T>(
v.begin(), v.end());
},
pybind11::keep_alive<0, 1>() /* Essential: keep list alive while iterator exists */
);
}
template <typename Vector, typename Class_> auto vector_if_insertion_operator(Class_ &cl, std::string const &name)
-> decltype(std::declval<std::ostream&>() << std::declval<typename Vector::value_type>(), void()) {
using size_type = typename Vector::size_type;
cl.def("__repr__",
[name](Vector &v) {
std::ostringstream s;
s << name << '[';
for (size_type i=0; i < v.size(); ++i) {
s << v[i];
if (i != v.size() - 1)
s << ", ";
}
s << ']';
return s.str();
},
"Return the canonical string representation of this list."
);
}
// Provide the buffer interface for vectors if we have data() and we have a format for it
// GCC seems to have "void std::vector<bool>::data()" - doing SFINAE on the existence of data() is insufficient, we need to check it returns an appropriate pointer
template <typename Vector, typename = void>
struct vector_has_data_and_format : std::false_type {};
template <typename Vector>
struct vector_has_data_and_format<Vector, pybind11::detail::enable_if_t<std::is_same<decltype(pybind11::format_descriptor<typename Vector::value_type>::format(), std::declval<Vector>().data()), typename Vector::value_type*>::value>> : std::true_type {};
// Add the buffer interface to a vector
template <typename Vector, typename Class_, typename... Args>
pybind11::detail::enable_if_t<pybind11::detail::any_of<std::is_same<Args, pybind11::buffer_protocol>...>::value>
vector_buffer(Class_& cl) {
using T = typename Vector::value_type;
static_assert(vector_has_data_and_format<Vector>::value, "There is not an appropriate format descriptor for this vector");
// numpy.h declares this for arbitrary types, but it may raise an exception and crash hard at runtime if PYBIND11_NUMPY_DTYPE hasn't been called, so check here
pybind11::format_descriptor<T>::format();
cl.def_buffer([](Vector& v) -> pybind11::buffer_info {
return pybind11::buffer_info(v.data(), static_cast<ssize_t>(sizeof(T)), pybind11::format_descriptor<T>::format(), 1, {v.size()}, {sizeof(T)});
});
cl.def("__init__", [](Vector& vec, pybind11::buffer buf) {
auto info = buf.request();
if (info.ndim != 1 || info.strides[0] % static_cast<ssize_t>(sizeof(T)))
throw pybind11::type_error("Only valid 1D buffers can be copied to a vector");
if (!pybind11::detail::compare_buffer_info<T>::compare(info) || (ssize_t) sizeof(T) != info.itemsize)
throw type_error("Format mismatch (Python: " + info.format + " C++: " + pybind11::format_descriptor<T>::format() + ")");
new (&vec) Vector();
vec.reserve((size_t) info.shape[0]);
T *p = static_cast<T*>(info.ptr);
ssize_t step = info.strides[0] / static_cast<ssize_t>(sizeof(T));
T *end = p + info.shape[0] * step;
for (; p != end; p += step)
vec.push_back(*p);
});
return;
}
template <typename Vector, typename Class_, typename... Args>
pybind11::detail::enable_if_t<!pybind11::detail::any_of<std::is_same<Args, pybind11::buffer_protocol>...>::value> vector_buffer(Class_&) {}
} // namespace detail
//
// std::vector
//
template <typename Vector, typename holder_type = std::unique_ptr<Vector>, typename... Args>
pybind11::class_<Vector, holder_type> bind_vector(pybind11::module &m, std::string const &name, Args&&... args) {
using Class_ = pybind11::class_<Vector, holder_type>;
Class_ cl(m, name.c_str(), std::forward<Args>(args)...);
// Declare the buffer interface if a buffer_protocol() is passed in
detail::vector_buffer<Vector, Class_, Args...>(cl);
cl.def(pybind11::init<>());
cl.def(pybind11::init<size_t>());
// Register copy constructor (if possible)
detail::vector_if_copy_constructible<Vector, Class_>(cl);
// Register comparison-related operators and functions (if possible)
detail::vector_if_equal_operator<Vector, Class_>(cl);
// Register stream insertion operator (if possible)
detail::vector_if_insertion_operator<Vector, Class_>(cl, name);
// Modifiers require copyable vector value type
detail::vector_modifiers<Vector, Class_>(cl);
// Accessor and iterator; return by value if copyable, otherwise we return by ref + keep-alive
detail::vector_accessor<Vector, Class_>(cl);
cl.def("get_range", [](Vector& v){return std::make_pair(v.begin(),v.end());},"get_range function"
);
cl.def("__bool__",
[](const Vector &v) -> bool {
return !v.empty();
},
"Check whether the list is nonempty"
);
cl.def("__len__", &Vector::size);
return cl;
}
}
#endif /* BIND_CONTAINER_H_ */